Fossil with Commonmark

###
#   Dockerfile for Fossil
###
FROM fedora:21

### Now install some additional parts we will need for the build


RUN yum update -y && yum install -y gcc make zlib-devel openssl-devel tcl-devel tar && yum clean all && groupadd -r fossil -g 433 && useradd -u 431 -r -g fossil -d /opt/fossil -s /sbin/nologin -c "Fossil user" fossil

### If you want to build "trunk", change the next line accordingly.
ENV FOSSIL_INSTALL_VERSION release

RUN curl "http://www.fossil-scm.org/index.html/tarball/fossil-src.tar.gz?name=fossil-src&uuid=${FOSSIL_INSTALL_VERSION}" | tar zx
RUN cd fossil-src && ./configure --disable-lineedit --disable-fusefs --json --with-th1-docs --with-th1-hooks --with-tcl --with-tcl-stubs --with-tcl-private-stubs && make;
RUN cp fossil-src/fossil /usr/bin && rm -rf fossil-src && chmod a+rx /usr/bin/fossil && mkdir -p /opt/fossil && chown fossil:fossil /opt/fossil





### Build is done, remove modules no longer needed
RUN yum remove -y gcc make zlib-devel openssl-devel tcl-devel tar && yum clean all

USER fossil

ENV HOME /opt/fossil

RUN fossil new --docker -A admin /opt/fossil/repository.fossil && fossil user password -R /opt/fossil/repository.fossil admin admin && fossil cache init -R /opt/fossil/repository.fossil



EXPOSE 8080

CMD ["/usr/bin/fossil", "server", "/opt/fossil/repository.fossil"]

  int rc = mtime_of_manifest_file(sqlite3_value_int(argv[0]),
                                  sqlite3_value_int(argv[1]), &mtime);
  if( rc==0 ){
    sqlite3_result_int64(context, mtime);
  }
}

/*
** SQL wrapper around the symbolic_name_to_rid() C-language API.
** Examples:
**
**     symbolic_name_to_rid('trunk');
**     symbolic_name_to_rid('trunk','w');
**
*/
void db_sym2rid_function(
  sqlite3_context *context,
  int argc,
  sqlite3_value **argv
){
  char const * arg;
  char const * type;

      sqlite3_result_null(context);
    }else{
      sqlite3_result_int64(context, rid);
    }
  }
}

/*
** Register the SQL functions that are useful both to the internal 
** representation and to the "fossil sql" command.
*/
void db_add_aux_functions(sqlite3 *db){
  sqlite3_create_function(db, "checkin_mtime", 2, SQLITE_UTF8, 0,
                          db_checkin_mtime_function, 0, 0);
  sqlite3_create_function(db, "symbolic_name_to_rid", 1, SQLITE_UTF8, 0,
                          db_sym2rid_function, 0, 0);
  sqlite3_create_function(db, "symbolic_name_to_rid", 2, SQLITE_UTF8, 0,
                          db_sym2rid_function, 0, 0);
}


/*
** Open a database file.  Return a pointer to the new database
** connection.  An error results in process abort.
*/
LOCAL sqlite3 *db_open(const char *zDbName){
  int rc;
  sqlite3 *db;

  if( g.fSqlTrace ) fossil_trace("-- sqlite3_open: [%s]\n", zDbName);
  rc = sqlite3_open_v2(
       zDbName, &db,
       SQLITE_OPEN_READWRITE | SQLITE_OPEN_CREATE,
       g.zVfsName
  );
  if( rc!=SQLITE_OK ){
    db_err("[%s]: %s", zDbName, sqlite3_errmsg(db));
  }
  sqlite3_busy_timeout(db, 5000);
  sqlite3_wal_autocheckpoint(db, 1);  /* Set to checkpoint frequently */
  sqlite3_create_function(db, "now", 0, SQLITE_UTF8, 0,

                                 db_now_function, 0, 0);
  sqlite3_create_function(db, "user", 0, SQLITE_UTF8, 0, db_sql_user, 0, 0);
  sqlite3_create_function(db, "cgi", 1, SQLITE_UTF8, 0, db_sql_cgi, 0, 0);
  sqlite3_create_function(db, "cgi", 2, SQLITE_UTF8, 0, db_sql_cgi, 0, 0);
  sqlite3_create_function(db, "print", -1, SQLITE_UTF8, 0,db_sql_print,0,0);
  sqlite3_create_function(
    db, "is_selected", 1, SQLITE_UTF8, 0, file_is_selected,0,0
  );
  sqlite3_create_function(
    db, "if_selected", 3, SQLITE_UTF8, 0, file_is_selected,0,0
  );








  if( g.fSqlTrace ) sqlite3_trace(db, db_sql_trace, 0);
  db_add_aux_functions(db);  
  re_add_sql_func(db);  /* The REGEXP operator */
  foci_register(db);    /* The "files_of_checkin" virtual table */
  sqlite3_exec(db, "PRAGMA foreign_keys=OFF;", 0, 0, 0);
  return db;
}


/*
** Detaches the zLabel database.

**
*******************************************************************************
**
** This routine implements an SQLite virtual table that gives all of the
** files associated with a single checkin.
**
** The filename "foci" is short for "Files Of CheckIn".
**
** Usage example:
**
**    CREATE VIRTUAL TABLE temp.foci USING files_of_checkin;
**                      -- ^^^^--- important!
**    SELECT * FROM foci WHERE checkinID=symbolic_name_to_rid('trunk');
**
** The symbolic_name_to_rid('trunk') function finds the BLOB.RID value 
** corresponding to the 'trunk' tag.  Then the files_of_checkin virtual table
** decodes the manifest defined by that BLOB and returns all files described
** by that manifest.  The "schema" for the temp.foci table is:
**
**     CREATE TABLE files_of_checkin(
**       checkinID    INTEGER,    -- RID for the checkin manifest
**       filename     TEXT,       -- Name of a file
**       uuid         TEXT,       -- SHA1 hash of the file
**       previousName TEXT,       -- Name of the file in previous checkin
**       perm         TEXT        -- Permissions on the file
**     );
**
*/
#include "config.h"
#include "foci.h"
#include <assert.h>

/*
** The schema for the virtual table:

**
** Usage: %fossil publish ?--only? TAGS...
**
** Cause artifacts identified by TAGS... to be published (made non-private).
** This can be used (for example) to convert a private branch into a public
** branch, or to publish a bundle that was imported privately.
**
** If any of TAGS names a branch, then all checkins on the most recent
** instance of that branch are included, not just the most recent checkin.
**
** If any of TAGS name checkins then all files and tags associated with
** those checkins are also published automatically.  Except if the --only
** option is used, then only the specific artifacts identified by TAGS
** are published.
**

            fprintf(pArg->out,"%d,", sqlite3_column_int(pExplain, 2));
            fprintf(pArg->out,"%s\n", sqlite3_column_text(pExplain, 3));
          }
        }
        sqlite3_finalize(pExplain);
        sqlite3_free(zEQP);
      }

#if USE_SYSTEM_SQLITE+0==1
      /* Output TESTCTRL_EXPLAIN text of requested */
      if( pArg && pArg->mode==MODE_Explain && sqlite3_libversion_number()<3008007 ){
        const char *zExplain = 0;
        sqlite3_test_control(SQLITE_TESTCTRL_EXPLAIN_STMT, pStmt, &zExplain);
        if( zExplain && zExplain[0] ){
          fprintf(pArg->out, "%s", zExplain);
        }
      }
#endif

      /* If the shell is currently in ".explain" mode, gather the extra
      ** data required to add indents to the output.*/
      if( pArg && pArg->mode==MODE_Explain ){
        explain_data_prepare(pArg, pStmt);
      }

*/
static int sqlcmd_autoinit(
  sqlite3 *db,
  const char **pzErrMsg,
  const void *notUsed
){
  add_content_sql_commands(db);
  db_add_aux_functions(db);
  re_add_sql_func(db);
  g.zMainDbType = "repository";
  foci_register(db);
  g.repositoryOpen = 1;
  g.db = db;
  return SQLITE_OK;
}

/*
** COMMAND: sqlite3
**
** Usage: %fossil sqlite3 ?DATABASE? ?OPTIONS?
**
** Run the standalone sqlite3 command-line shell on DATABASE with OPTIONS.
** If DATABASE is omitted, then the repository that serves the working
** directory is opened.  See https://www.sqlite.org/cli.html for additional
** information.
**
** WARNING:  Careless use of this command can corrupt a Fossil repository
** in ways that are unrecoverable.  Be sure you know what you are doing before
** running any SQL commands that modifies the repository database.
**
** The following extensions to the usual SQLite commands are provided:
**
**    content(X)                Return the contenxt of artifact X.  X can be a
**                              SHA1 hash or prefix or a tag.
**
**    compress(X)               Compress text X.
**
**    decompress(X)             Decompress text X.  Undoes the work of
**                              compress(X).
**
**    checkin_mtime(X,Y)        Return the mtime for the file Y (a BLOB.RID)
**                              found in check-in X (another BLOB.RID value).
**
**    symbolic_name_to_rid(X)   Return a the BLOB.RID corresponding to symbolic
**                              name X.
**
**    REGEXP                    The REGEXP operator works, unlike in
**                              standard SQLite.
**
**    files_of_checkin          The "files_of_check" virtual table is
**                              available for decoding manifests.
**
** Usage example for files_of_checkin:
**
**     CREATE VIRTUAL TABLE temp.foci USING files_of_checkin;
**     SELECT * FROM foci WHERE checkinID=symbolic_name_to_rid('trunk');
*/
void cmd_sqlite3(void){
  extern int sqlite3_shell(int, char**);
  db_find_and_open_repository(OPEN_ANY_SCHEMA, 0);
  db_close(1);
  sqlite3_shutdown();
  sqlite3_shell(g.argc-1, g.argv+1);

**
** See also: [sqlite3_libversion()],
** [sqlite3_libversion_number()], [sqlite3_sourceid()],
** [sqlite_version()] and [sqlite_source_id()].
*/
#define SQLITE_VERSION        "3.8.8"
#define SQLITE_VERSION_NUMBER 3008008
#define SQLITE_SOURCE_ID      "2015-01-16 12:08:06 7d68a42face3ab14ed88407d4331872f5b243fdf"

/*
** CAPI3REF: Run-Time Library Version Numbers
** KEYWORDS: sqlite3_version, sqlite3_sourceid
**
** These interfaces provide the same information as the [SQLITE_VERSION],
** [SQLITE_VERSION_NUMBER], and [SQLITE_SOURCE_ID] C preprocessor macros

** Functions to deserialize a 16 bit integer, 32 bit real number and
** 64 bit integer. The deserialized value is returned.
*/
static int readInt16(u8 *p){
  return (p[0]<<8) + p[1];
}
static void readCoord(u8 *p, RtreeCoord *pCoord){
  pCoord->u = (
    (((u32)p[0]) << 24) + 
    (((u32)p[1]) << 16) + 
    (((u32)p[2]) <<  8) + 
    (((u32)p[3]) <<  0)
  );

}
static i64 readInt64(u8 *p){
  return (
    (((i64)p[0]) << 56) + 
    (((i64)p[1]) << 48) + 
    (((i64)p[2]) << 40) + 
    (((i64)p[3]) << 32) + 

  p[1] = (i>> 0)&0xFF;
  return 2;
}
static int writeCoord(u8 *p, RtreeCoord *pCoord){
  u32 i;
  assert( sizeof(RtreeCoord)==4 );
  assert( sizeof(u32)==4 );
  i = pCoord->u;
  p[0] = (i>>24)&0xFF;
  p[1] = (i>>16)&0xFF;
  p[2] = (i>> 8)&0xFF;
  p[3] = (i>> 0)&0xFF;
  return 4;
}
static int writeInt64(u8 *p, i64 i){

static void nodeGetCell(
  Rtree *pRtree,               /* The overall R-Tree */
  RtreeNode *pNode,            /* The node containing the cell to be read */
  int iCell,                   /* Index of the cell within the node */
  RtreeCell *pCell             /* OUT: Write the cell contents here */
){
  u8 *pData;

  RtreeCoord *pCoord;
  int ii;
  pCell->iRowid = nodeGetRowid(pRtree, pNode, iCell);
  pData = pNode->zData + (12 + pRtree->nBytesPerCell*iCell);

  pCoord = pCell->aCoord;
  for(ii=0; ii<pRtree->nDim*2; ii++){
    readCoord(&pData[ii*4], &pCoord[ii]);
  }
}


/* Forward declaration for the function that does the work of
** the virtual table module xCreate() and xConnect() methods.
*/

**
** See also: [sqlite3_libversion()],
** [sqlite3_libversion_number()], [sqlite3_sourceid()],
** [sqlite_version()] and [sqlite_source_id()].
*/
#define SQLITE_VERSION        "3.8.8"
#define SQLITE_VERSION_NUMBER 3008008
#define SQLITE_SOURCE_ID      "2015-01-16 12:08:06 7d68a42face3ab14ed88407d4331872f5b243fdf"

/*
** CAPI3REF: Run-Time Library Version Numbers
** KEYWORDS: sqlite3_version, sqlite3_sourceid
**
** These interfaces provide the same information as the [SQLITE_VERSION],
** [SQLITE_VERSION_NUMBER], and [SQLITE_SOURCE_ID] C preprocessor macros

**    s=TEXT         string search (comment and brief)
**    ng             Suppress the graph if present
**    nd             Suppress "divider" lines
**    v              Show details of files changed
**    f=UUID         Show family (immediate parents and children) of UUID
**    from=UUID      Path from...
**    to=UUID          ... to this

**    shortest         ... show only the shortest path
**    uf=FUUID       Show only checkins that use given file version
**    brbg           Background color from branch name
**    ubg            Background color from user
**    namechng       Show only checkins that filename changes
**    ym=YYYY-MM     Shown only events for the given year/month.
**    datefmt=N      Override the date format

  *  <a href="../../../fdiff?v1=d1c60722e0b9d775&v2=58d1a8991bacb113"
     target="testwindow">Column alignment with multibyte characters.</a>
     The edit of a line with multibyte characters is the first chunk.
  *  <a href="../../../fdiff?v1=57b0d8183cab0e3d&v2=37b3ef49d73cdfe6"
     target="testwindow">Large diff of sqlite3.c</a>.  This diff was very
     slow prior to the performance enhancement change [9e15437e97].
  *  <a href="../../../info/bda00cbada#chunk49" target="testwindow">
     A difficult indentation change.</a> (show-version-diffs must be enabled)
  *  <a href="../../../fdiff?v1=955cc67ace8fb622&v2=e2e1c87b86664b45#chunk13"
      target="testwindow">Another tricky indentation.</a>  Notice especially
      lines 59398 and 59407 on the left.
  *  <a href="../../../fdiff?v2=955cc67ace8fb622&v1=e2e1c87b86664b45#chunk13"
      target="testwindow">Inverse of the previous.</a>
  *  <a href="../../../fdiff?v1=955cc67ace8fb622&v2=e2e1c87b86664b45#chunk24"
      target="testwindow">A complex change</a> that is difficult to align, and

     </a>
  *  <a href="../../../timeline?y=ci&a=2010-12-20" target="testwindow">
     multiple branch risers.</a>
  *  <a href="../../../timeline?y=ci&a=2010-12-20&n=18" target="testwindow">
     multiple branch risers, n=18.</a>
  *  <a href="../../../timeline?y=ci&a=2010-12-20&n=9" target="testwindow">
     multiple branch risers, n=9.</a>
  *  <a href="../../../timeline?r=experimental&n=0" target="testwindow">
     Experimental branch with related check-ins.</a>
  *  <a href="../../../timeline?r=experimental&mionly&n=0" target="testwindow">
     Experimental branch with merge-ins only.</a>
  *  <a href="../../../timeline?t=experimental&n=0" target="testwindow">
     Experimental branch check-ins only.</a>


  *  <a href="../../../timeline?r=release&n=0" target="testwindow">
     Check-ins tagged "release" and related check-ins</a>
  *  <a href="../../../timeline?r=release&mionly&n=0" target="testwindow">
     Check-ins tagged "release" and merge-ins</a>
  *  <a href="../../../timeline?t=release&n=0" target="testwindow">
     Only check-ins tagged "release"</a>
  *  <a href="../../../finfo?name=Makefile" target="testwindow">
     History of source file "Makefile".</a>
  *  <a href="../../../timeline?a=1970-01-01" target="testwindow">
     20 elements after 1970-01-01.</a>
  *  <a href="../../../timeline?n=100000000&y=ci" target="testwindow">
     All check-ins - a huge graph.</a>
  *  <a href="../../../timeline?f=8dfed953f7530442" target="testwindow">
     This malformed commit has a
     merge parent which is not a valid checkin.</a>
  *  <a href="../../../timeline?from=e663bac6f7&to=a298a0e2f9&shortest"
     target="testwindow">
     From e663bac6f7 to a298a0e2f9 by shortest path.</a>
  *  <a href="../../../timeline?from=e663bac6f7&to=a298a0e2f9"
     target="testwindow">
     From e663bac6f7 to a298a0e2f9 without merge links.</a>
  *  <a href="../../../timeline?me=e663bac6f7&you=a298a0e2f9"
     target="testwindow">
     Common ancestor path of e663bac6f7 to a298a0e2f9.</a>
  *  <a href="../../../timeline?f=65dd90fb95a2af55" target="testwindow">
     Merge on the same branch does not result in a leaf.
     </a>
  *  <a href="../../../timeline?c=20015206bc"
     target="testwindow">
     This timeline has a hidden commit.</a> Click Unhide to reveal.

External:

  *  <a href="http://www.sqlite.org/src/timeline?c=2010-09-29&nd"
     target="testwindow">Timewarp due to a mis-configured system clock.</a>

<title>Change Log</title>

<h2>Changes For Version 1.30 (2015-01-19)</h2>
  *  Added the [/help?cmd=bundle|fossil bundle] command.
  *  Added the [/help?cmd=purge|fossil purge] command.
  *  Added the [/help?cmd=publish|fossil publish] command.
  *  Added the [/help?cmd=unpublished|fossil unpublished] command.
  *  Enhance the [/tree] webpage to show the age of each file with the option
     to sort by age.
  *  Enhance the [/brlist] webpage to show additional information about each branch
     and to be sortable by clicking on column headers.
  *  Add support for Docker. Just install docker and type
     "sudo docker run -d -p 8080:8080 nijtmans/fossil" to get it running.
  *  Add the [/help/fusefs|fossil fusefs DIRECTORY] command that mounts a
     Fuse Filesystem at the given DIRECTORY and populates it with read-only
     copies of all historical check-ins. This only works on systems that
     support FuseFS.
  *  Add the administrative log that records all configuration.
  *  Added the [/sitemap] webpage.
  *  Added the [/bloblist] web page.
  *  Let [/help?cmd=new|fossil new] no longer create an initial empty commit
     by default. The first commit after checking out an empty repository will
     become the initial commit.
  *  Added the [/help?cmd=all|fossil all dbstat] and
     [/help?cmd=all|fossil all info] commands.
  *  Update SQLite to version 3.8.8.
  *  Added the --verily option to the [/help?cmd=clean|fossil clean] command.
  *  Add the "autosync-tries" setting to control the number of autosync attempts
     before returning an error.
  *  Added a compile-time option (--with-miniz) to build using miniz instead
     of zlib.  Disabled by default.

  *  Support customization of commands and webpages, including the ability to
     add new ones, via the "TH1 hooks" feature.  Disabled by default. Enabled
     via a compile-time option.
  *  Add the <nowiki>[checkout], [render], [styleHeader], [styleFooter],
     [trace], [getParameter], [setParameter], [artifact], and
     [globalState]</nowiki> commands to TH1, primarily for use by TH1 hooks.
  *  Automatically adjust the width of command-line timeline output according to the
     detected width of the terminal.

  *  Prompt the user to optionally fix invalid UTF-8 at check-in.





  *  Added a line-number toggle option to the [/help?cmd=/info|/info]
     and [/help?cmd=/artifact|/artifact] pages.
  *  Most commands now issue errors rather than silently ignoring unrecognized
     command-line options.
  *  Use full 40-character SHA1 hashes (instead of abbreviations) in most
     internal URLs.
  *  The "ssh:" sync method on windows now uses "plink.exe" instead of "ssh" as
     the secure-shell client program.
  *  Prevent a partial clone when the connection is lost.
  *  Make the distinction between 301 and 302 redirects.
  *  Allow commits against a closed check-in as long as the commit goes onto
     a different branch.
  *  Improved cache control in the web interface reduces unnecessary requests
     for common resources like the page logo and CSS.
  *  Fix a rare and long-standing sync protocol bug
     that would silently prevent the sync from running to completion.  Before
     this bug-fix it was sometimes necessary to do "fossil sync --verily" to
     get two repositories in sync.
  *  Add the [/finfo?name=src/foci.c|files_of_checkin] virtual table - useful
     for ad hoc queries in the [/help?cmd=sqlite3|fossil sql] interface,
     and also used internally.
  *  Added the "$secureurl" TH1 variable for use in headers and footers.
  *  (Internal:) Add the ability to include resources as separate files in the
     source tree that are converted into constant byte arrays in the compiled
     binary.  Use this feature to store the Tk script that implements the --tk
     diff option in a separate file for easier editing.
  *  (Internal:) Implement a system of compile-time checks to help ensure
     the correctness of printf-style formatting strings.
  *  Fix CVE-2014-3566, also known as the POODLE SSL 3.0 vulnerability.
  *  Numerous documentation fixes and improvements.
  *  Other obscure and minor bug fixes - see the timeline for details.

<h2>Changes For Version 1.29 (2014-06-12)</h2>
  *  Add the ability to display content, diffs and annotations for UTF16
     text files in the web interface.
  *  Add the "SaveAs..." and "Invert" buttons
     to the graphical diff display that results
     from using the --tk option with the [/help/diff | fossil diff] command.